SNP Profiles of UF 613   View Data

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 Key

 1234567891011121314
_Input profile
CGATAAGTTTCCCCAGAAGGAGACCTGT
1._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
2._RUQ_1573
CGATCCTTCTACCCAGATAGAAACCTGT
3._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
4._GC-08-046-1-57
CGATCCTTCTACCCAGATAGAAACCTGT
5._GC-08-046-1-57
CGATCCTTCTACCCAGATAGAAACCTGT
6._GC-08-046-1-57
CGATCCTTCTACCCAGATAGAAACCTGT
7._GC-08-046-1-57
CGATCCTTCTACCCAGATAGAAACCTGT
8._GC-05-057-2-08
CGATCCTTCTACCCAGATAGAAACCTGT
9._GC-05-057-2-08
CGATCCTTCTACCCAGATAGAAACCTGT
10._GC-05-057-2-08
CGATCCTTCTACCCAGATAGAAACCTGT
11._GC-05-057-2-08
CGATCCTTCTACCCAGATAGAAACCTGT
12._GC-05-057-2-08
CGATCCTTCTACCCAGATAGAAACCTGT
13._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
14._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
15._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
16._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
17._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
18._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
19._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
20._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
21._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
22._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
23._GC-08-046-1-57
CGATCCTTCTACCCAGATAGAAACCTGT
24._GC-08-046-1-57
CGATCCTTCTACCCAGATAGAAACCTGT
25._GC-08-046-1-57
CGATCCTTCTACCCAGATAGAAACCTGT
26._UF_613
CGATCCTTCTACCCAGATAGAAACCTGT
27._GC-08-046-1-57
CGATCCTTCTACCCAGATAGAAACCTGT
28._RUQ_1573
__CC____AG___AC__
29._UF_613
CGATCCTTCTAC_AGATAGAAACCTGT
30._RUQ_1573
__CCTTCTACCCAGAT_AAACCTGT
31._RUQ_1573
__CC_CTACGGAGAT_____
 1516171819202122232425262728
_Input profile
CGACTTAGGGCGCTCTCGATCTAGTTAG
1._UF_613
CCACCTAATTGGCTTTGGATTTAGCTAG
2._RUQ_1573
CCACCTAATTGGCTTTGGATTTAGCTAG
3._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
4._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
5._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
6._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
7._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
8._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
9._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
10._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
11._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
12._GC-05-057-2-08
CCACCT_TTGGCTTTGGATTTAGCTAG
13._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
14._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
15._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
16._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
17._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
18._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
19._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
20._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
21._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
22._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
23._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
24._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
25._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
26._UF_613
CCACCT_TTGGCTTTGGATTTAGCTAG
27._GC-08-046-1-57
CCACCT_TTGGCTTTGGATTTAGCTAG
28._RUQ_1573
CCAC_AATTGG_____AG_AG
29._UF_613
CCACCTAATTGGCTTTGGATTTAGCTAG
30._RUQ_1573
CCACCT_TTGGCT____AGCT_
31._RUQ_1573
CCAC___CCCT___TT_CT_
 2930313233343536373839   
_Input profile
AACTTTGTCCACCTCCCGAGCTX_XX_XX_X
1._UF_613
ATCTCTGTCCACCTCTGGAGCTX_XX_XX_X
2._RUQ_1573
ATCTCTGTCCACCTCTGGAGCTX_XX_XX_X
3._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
4._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
5._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
6._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
7._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
8._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
9._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
10._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
11._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
12._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
13._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
14._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
15._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
16._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
17._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
18._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
19._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
20._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
21._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
22._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
23._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
24._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
25._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
26._UF_613
ATCTCTGTCCAA_CTGGAGCTX_XX_XX_X
27._GC-08-046-1-57
ATCTCTGTCCAA_CTGGAGCTX_XX_XX_X
28._RUQ_1573
_CT_GT____GG__X_XX_XX_X
29._UF_613
AT_CTGTCCACCTCTGGAGTTX_XX_XX_X
30._RUQ_1573
___GT___CTGGAG_X_XX_XX_X
31._RUQ_1573
________CC__X_XX_XX_X

Input profile: UF_613

 
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Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._UF_613

71.8 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._UF_613 RUQ_1573

71.8 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

4._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

6._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

7._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

9._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

10._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

14._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

15._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

16._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

17._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

18._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

19._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

20._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

21._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

22._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

26._UF_613

70.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

27._UF_613 GC-08-046-1-57

70.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._UF_613 RUQ_1573

69.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

29._UF_613

68.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

30._UF_613 RUQ_1573

67.4 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._UF_613 RUQ_1573

53.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520